Methods

Realistic scRNA-read simulation at isoform resolution using scr⁴eam

At my second attendance of the Jornades de Bioinformàtica i Genòmica, I presented scr⁴eam, a new tool I developed to simulate realistic single-cell RNA-seq reads. [Selected Talk; 7’ + 3']

Quantification of transcript isoforms at the single-cell level using SCALPEL

SCALPEL, a nextflow based tool for the quantification of isoforms at single-cell resolution.